malosreet

I was experiencing a similar problem and found that when importing a Seurat object (Seurat v3) using the SeuratWrappers function as.cell_data_set, the cds@colData$Size_Factor is set to the sum of UMI...

I am also facing a similar issue with netVisual_bubble where the p-values are all 3. After looking at the source code, I think what is being returned in the size...

I was able to move past the error on this step when I renamed all my clusters to the format "cluster0", "cluster1", etc, similar to this response: https://github.com/JCVenterInstitute/NSForest/issues/4#issuecomment-882963655