Federico Mattiello

`sim.fmsm()` different results with `tidy=TRUE` vs `tidy=FALSE`

3

The MRE below shows that only uncensored paths are returned when `tidy=TRUE`. Is this on purpose @chjackson? I couldn't find reference to this behaviour in the help page. I think...

Propose to add _"miscalibration"_ plot

3

Instead of plotting `y` _vs._ `x` in the calibration plot, drawing `y–x` _vs._ `x` gives a _miscalibration_ plot, which is focusing on what is most interesting: deviation from equality. I...

Allow otu_table to be *sparse*

2

As often abundance data matrices are full of zeroes, it could be useful to allow `otu_table(physeq).@Data` slot to accept also _sparse_ matrices, I'm thinking to `dgCMatrix-class`. Is it feasible? Would...

`futilityBounds` Z-score to be computed within `getSampleSizeSurvival`

1

It would be useful to let `getSampleSizeSurvival()` compute the `futilityBounds` in case it is left blank in the `TrialDesign` object. I can understand it's not easily generalizable to all types...

How to add IDs into the bars of the `plotEvents()`

2

First of all, thanks for the `{reReg}` and the `{reda}` packages, very helpful in my case. My request is: how could I annotate the bars of the `plotEvents()` with the...

`sim.fmsm` gives different number of transitions when simulating same sample size

1

Simulating the same number of subjects from the `bosms3` dataset doesn't give the same number of transitions. I wasn't expecting exactly the same numbers but these differences seem weird. Here...