Denis Jacob Machado

icon indicating a website link https://phyloinformatics.com

icon company UNC Charlotte icon location Charlotte, NC icon location I am a bioinformatician and phylogeneticist that enjoys working on comparative genomics and evolution.

Results 2 issues of Denis Jacob Machado

Important output missing: No repeat coverage information ('X_contig_pairs_info.txt_cov_info_with_cutoff.txt')

Hi! This issue appears to have some similarities to another open issue (#11) entitled [TERefiner_1 error](https://github.com/simoncchu/REPdenovo/issues/11). I ran REPdenovo and produced a `contigs.fa` file. I found no obvious errors or...

"_PATHs" on the configuration file

2 comment

This is a report of issues with the variable ending in "_PATH" on the configuration file (with a fix). The configuration file for REPdenovo's main.py take several paths to different...

enhancement