Maarten de Vries

Thank you for the great package. Perhaps a naive question: Is it possible to obtain a subgraph of an ontology using pronto? I'd like to grab a term and all...

In run.r, lines 235-237, when creating covariance matrices, I believe one should convert the Sample column to factor (for epi.cov, fib.cov and imm.cov). This prevents p.find_markers in markers.r from throwing...

img_scrape.py line 22

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 Hi Jeff, Thanks so much for posting this resource, it's really well explained. I'm relatively new to Python, but have gone through...

Hi, Thank you for the great tool. I was wondering whether there is a plan to support sparse matrices (e.g. as used in AnnData files) as inputs? Right now, using...

[FEA] `sc.tl.ingest`

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**Is your feature request related to a problem? Please describe.** I wish I could use rapids-singlecell to map labels and embeddings from reference data to new data **Describe the solution...

fix issue with torch/numpy indexing

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I am personally not able to run scPoli unless I use this workaround.