Medelin Ocejo

Unperfomed analyses despite no warning message in TORMES log file?

3

Dear Narciso, as I previously mentioned in past issue #11 , we encountered several errors after running TORMES pipeline. We didn´t obtain any output for Pangenome and FimH analyses. Furthermore,...

How to edit tormes_report.Rmd?

1

Dear Narciso, first of all, congratulations and a big thank you for developing this useful and handy pipeline. We have run the pipeline with several strains of _E. coli_ (using...

Is it possible to merge reports from different runs?

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Is it possible to **merge** two separate reports into a single one? We have around 70 samples in total and had to run the analyses in two batches, presumably because...

I would appreciate any suggestions to adapt the default parameters for ONT (Oxford Nanopore) long-read sequence data. Running prokka and roary with default parameters returns almost 3x the genes (pangenome)...

Hi! First of all, thank you very much for this tool! :) In the output, I got many assignments that are not complete in all levels like this: ``` d__Bacteria|p__Cyanobacteria|o__Pleurocapsales|g__Stanieria...