lz870718

Hi Alex, Thank you so much for your reply. I just tried the solution provided. However, I encounter below error message Error: 'mergeTabix' is not an exported object from 'namespace:methylKit'...

Hi Alex, The methylKit::mergeTabix step works now with additional ':'. I now got a new error as below. Could you help me with it? Error in readMethylBaseDB(dbpath = dbpath, dbtype...

I got it working with two batches of my data. I will try it out now with the full data set and see how it goes. Will keep you posted....

Hi Alex, When I try running it with all data. I got following error: Error in merge.data.table(res, tmp, by = c("V1", "V2", "V3", "V4"), all = all) : x has...

Hi Alex, I worked around previous error message by merging no more than 4 methylbaseDB objects once a time. Then jointly merged the merged methylbaseDB objects later. Thank you for...

Sorry.. Just got a new error while trying to check the dimension of the merged object: dim(getData(batch_all)) Error in paste(tabixRes[[1]], collapse = "\n") : result would exceed 2^31-1 bytes

Hi Dr. Akalin, I tried with a subset of samples (n=200) and CpG bases (n=4,749,070) with no problem. When I extended the function with all samples (n=500) and CpG bases...

Hi Alex and Altuna, Thank you for your help on this matter. I am trying to annotate the whole big methylBaseDB object with annotateWithGeneParts() function. But I got this error...

Hi Asl, I sent them to [email protected]. Thank you for looking into it! Zhi