Lyam Bailey comments

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                                            Lyam Bailey

Direct functional -> standard transform gives better results than combining functional -> highres and highres -> standard

Hi @cookpa Thanks for the swift response! I've attached some example data. "subject-001_searchlight_results.nii.gz" is the functional image that I am trying to transform to MNI space. I also included the...

Direct functional -> standard transform gives better results than combining functional -> highres and highres -> standard

Woops, I forgot that example_func is not skull-stripped. Would it make more sense to use a skull-stripped COPE instead of example_func? Thanks for the code! Unfortunately there seems to be...

Direct functional -> standard transform gives better results than combining functional -> highres and highres -> standard

@cookpa, I really appreciate your help/advice on this matter. Using `--float 0` in the `antsRegistration` call fixed the problem, thanks for the tip. I aligned the t1w image to the...

Direct functional -> standard transform gives better results than combining functional -> highres and highres -> standard

You make a good point - that looking at the individual transforms is just as important as the final result of the composite transform (if I interpreted you correctly). With...

Direct functional -> standard transform gives better results than combining functional -> highres and highres -> standard

Thanks for the speedy reply! Ah, I misunderstood - I thought you were saying that one should avoid affine for the registration to standard space. Anyway, this has really cleared...