Lindsay Clark

Well, if the user has a `TxDb` then they probably already know something about Bioconductor and R, so maybe in that case they should also provide (via an additional argument)...

I'm working now on an `importTxDb` function. Is it critical to fill in the `gene_biotype` column of the `isoformFeatures` table?

I'm not going to finish Hacktoberfest and get my t-shirt, but I did make a lot of progress on an `importTxDb` function for IsoformSwitchAnalyzeR, and hopefully I can finish is...

I have written an `Export_Structure` function since a user was asking for it, but someone can still write a function to export to SPAGeDi if interested.

Another format which might be appreciated by plant breeders is [HapMap](https://bitbucket.org/tasseladmin/tassel-5-source/wiki/UserManual/Load/Load). To the best of my knowledge, there isn't software that can import a HapMap file with polyploid genotypes, but...

There are also requests for export to [GenoDive](https://www.bentleydrummer.nl/software/GenoDiveManual.pdf) and to `adegenet::genind` objects.

@nk183 Sure, thanks for doing this! **Going from `polyRAD` to `updog`** * I recommend outputting a named list with names `refmat`, `sizemat`, and `ploidy`, to make it clear how the...

Good to hear from you Jose! See this discussion regarding multiparent populations: https://github.com/lvclark/polyRAD/discussions/32#discussioncomment-4195617 For the parental replicates, I recommend a quick PCA to confirm that there are no mixups, then...

Leaving some notes here for myself: There needs to be a way to deal with errors in the pedigree, since greenhouse mixups, wayward pollen, and unexpected self-fertilization are so common....

All individuals start with even priors, then as information is added across the pedigree, priors get multiplied by the new information and normalized to sum to one. The unit of...