luxhexmaster

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netVisual_diffInteraction for specific source & targets

Hi all, can you explain how you added "net[is.na(net)]

netVisual_diffInteraction for specific source & targets

Hi @sqjin, I updated to the latest CellChat version (v1.5.0), but the error is still occurring. Doing netVisual_diffInteraction works as long as I do it for all cell populations: par(mfrow...

netVisual_diffInteraction: Error in quantile.default(abs(net), probs = 1 - top)

@sdzxzh I can't find the reference code so I'm not sure how you added "net[is.na(net)]

Reproducibility issues in Seurat.

Hi all, I'm also having consistency issues with my scripts. The scripts haven't changed since I last ran them back in January, but are now producing different UMAPs. If any...

Same data, different Pearson Residuals

Hi Dr. Choudhary, just sent you the scripts and objects via email. Thanks!

What Communication probability value is to be considered for a believable interaction?

Hi Prof. Jin, I understand that based on RNA expression values, CellChat computes a Communication Probability and a p-value for each R-L interaction. To my understanding, the p-value indicates whether...

What Communication probability value is to be considered for a believable interaction?

Thank you very much Prof. Jin