Luke Thompson
Luke Thompson
Link to original EMP logo is broken: https://earthmicrobiome.org/about/logo/ Also, "www.earthmicrobiome.org" does not redirect to "earthmicrobiome.org". We might need Jeff to do a 301 redirect. #123 @lfnothias
Grant said: I ran into an error on the sequence alignment step, and the culprit was the muscle package. After a little digging, it turns out that a couple of...
Command: ``` qiime fragment-insertion sepp ```
Currently supports: ``` Tetramer Amplicon locus Forward primer TACG 16S rRNA prok 515f (EMP) GTAG ITS rRNA euk ITS1f (EMP) GCT[AC] 18S rRNA euk Euk1391f (EMP) GTCG 12S rRNA mt...
Basic workflow: * BLASTN with --outputfmt 11 (ASN) * blast_formatter to get desired format * Ignore "uncultured" hits (by keyword or taxid) * Report NCBI taxomony Code: ``` cd tourmaline/02-denoised/dada2-pe...
config.yaml updates - state that changing database name has no effect on run, just for records - which is done first: trim or trunc? - add newlines for clarity
Getting errors like `invalid escape sequence '\/'`, `invalid escape sequence '\['`, and `invalid escape sequence '\|'` at the start of a snakemake run. May be related to new Python version...
I'm following the instructions for Apple Silicon and not quite sure how to proceed. Which parts do those specific commands replace? For all installations, do I activate the `snakemake-minimal` environment...