Luca Venturini
Luca Venturini
**Describe the bug** Observed in [bug 274 of Mikado](https://github.com/EI-CoreBioinformatics/mikado/issues/274) by myself and @fmarletaz: in certain conditions, FastNumbers crashes the program by returning `NULL` rather than None. **Expected behavior** FastNumbers should...
This can be found throughout the scripts in the distribution. It can be fixed by simply changing the wrapper default from sys.stdout to sys.stdout.buffer The latter will instruct python3 to...
In Python3, strings by default are Unicode, not ASCII. Therefore, the output of subprocess commands is of the "bytes", rather than "str", type. This makes re.search/match crash inside the function.
Good afternoon, I have to report that adding the "-A {pr}" clause inside the salloc command does cause salloc to crash silently on my system, probably for configuration issues inside...
Most systems have by now switched to samtools 1.x, as htslib was released over 2 years ago. Having to compile against a long-obsoleted version of samtools creates an unnecessary hurdle...
The question arises from the fact that my institute is working on at least 2 publications, in the near future possibly more, which are based among other tools on the...
Currently, progressiveCactus requires a long time to run ( 120 * (n-1) CPU days for n genomes, from another thread here) and therefore requires leveraging a cluster, which we cannot...
Currently `gffread` dies with segmentation fault when trying to extract features from a BGZIPped, indexed genome sequence.
Hi Dan, I have been playing with portcullis for long reads (Nanopore) and I see some potential - however, it does require changing a bit the conditions for the self...
Portcullis is looking for Python 3.6, however, Brew tries to install and link Portcullis to Python 3.6. Brew does not allow to install a specific version of Python (from a...