lsmainzer comments

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                                            lsmainzer

Thanks, that will help!

![ggps_4 0 bamcleaning withstagesmarked](https://user-images.githubusercontent.com/4040442/34805599-9179e4aa-f644-11e7-993e-c0e9ece4f015.png)

![modularity_implementation lsm](https://user-images.githubusercontent.com/4040442/34808799-cd56402e-f656-11e7-960a-7cb5803b1d0e.png)

Hello! Sorry to wake an old thread, but did the hotfix ever make it into master? We have a need for it too. Or was the issue recoded so it...