Lee Katz
Lee Katz
And what would `-l` point to? Is there a directory in `PERL5LIB`? I just feel like the modules installation documentation is pretty short.
Here is an example of `--installdeps` not working: https://github.com/lskatz/any2index/runs/3497261716?check_suite_focus=true#step:6:26
Does this help? You can take this script or modify it. https://github.com/lskatz/CG-Pipeline/blob/master/scripts/run_assembly_filterContigs.pl
And my question leading into this was whether the bam file is all reads mapped against the assembly or only those trimmed/cleaned/flash'd.
I took some language from * https://wiki.gacrc.uga.edu/wiki/FLASH-Sapelo * http://seqanswers.com/forums/showpost.php?p=90992&postcount=2 Filename | Description ---------|------------ `contigs.fa` | The final assembly you should use `shovill.log` | Full log file for bug reporting `shovill.corrections`...
Did you ever figure out this workflow @slvrshot ?
`cpanm` is a real command for "cpanminus" https://metacpan.org/pod/App::cpanminus
I checked out my repo to a new path and I cannot figure out how to change the path for `cargo build` either ``` - uses: actions/checkout@v3 with: path: fasten...
Hi @ondovb , how would I rename the samples up top in the merged Krona HTML from `ktImportKrona`? In my example, both are named 'kraken.' Where does it choose that...
Figured it out. Either: * Name the html file under the tag `blah` where blah is the name in this example * When creating the html file, run the command...