Lucas van Dijk

This pull requests adds a WDL pipeline and required WDL tasks to review a large number of variants. Candidate variants are called by comparing two high quality references, using Nucmer...

Hi, I noticed that my StrainGE package has very restrictive Python version requirements (python>=3.7,

Hi, quick question: what would be optimal way to get a list of neighbors of a node, restricting to neighbors associated with one or more given colors? I have an...

The class CompactedDBG has a function `add` to add sequence to the graph (and automatically turn it into unitigs). This function has not been adapted for ColoredCDBG, and it seems...

These seem to be missing :)

I've added a few types and functions that I found useful when building the Python bindings.

For my Python bindings I have custom type for unitig data (instead of void), but when I tried to compile with a custom unitig data type it gave an error...

Use modern CMake's target_* functions to set compiler flags/features

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Hi all, Thank you for this great piece of software, it's blazingly fast and memory efficient! The past few days I have been playing around a bit with the API,...

Add rna-seqc python utilities and qtl package

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Used `grayskull` to generate PyPI skeleton recipes.

I am trying to create updated bioconda packages for rnaseqc (see [(1)](https://github.com/bioconda/bioconda-recipes/pull/51342) and [(2)](https://github.com/bioconda/bioconda-recipes/pull/51344)). I was also trying to create a separate bioconda recipe for the python utils, as published...