Leroy Núñez, Ph.D.

Hello, Thank you very much for the response. The 2bit and chain files were generated from a HAL file of 61 genomes generated through Cactus. So the scaffolds should be...

I do not believe the dot in the transcript name would have an issue. I have issued jobs with the same reference that ran smoothly. Also, I realized that I...

I wanted to follow up, now that I have the results from more attempted jobs. So every run that I have attempted have failed with the same error mentioned in...

Sure, here are a few transcripts that keep crashing: > CM020106.1 70392312 70459950 XM_032226866.1 0 - 70394527 70459807 255,0,0 17 2377,106,138,71,123,191,111,122,149,188,145,191,124,170,69,264,300 0,2525,4309,4819,7569,10314,11744,12542,12767,15403,16733,20055,22919,23411,29369,41687,67338 CM020099.1 141063852 141200299 XM_032216150.1 0 - 141063852 141153535...

Sure, here is a Google Drive link for the input files: [https://drive.google.com/drive/folders/1i2AZr0zogw4SVFYqICpNe4MBLPkrZNHe?usp=sharing](https://drive.google.com/drive/folders/1i2AZr0zogw4SVFYqICpNe4MBLPkrZNHe?usp=sharing) The files here are for a different taxon, but the condition is the same as the command you...