Louis Blankemeier

Use series number to separate multiple series where the dicoms exist within the same folder.

dicom_to_nifti triggers an error if it detects that different slices have different orientations. Seems that using SimpleITK solves this.

Pack image outputs into Dicom files for Dicom input / output

Master pipeline

1

TODO: Implement a master pipeline that includes all currently implemented pipelines.

If the orientation differs from what is expected, the visualizations appear flipped or transposed. Added a ToCanonical module before visualization would solve this.

Nested pipelines

9

Use nested pipelines to reduce code duplication - pipeline as an InferenceClass object

Per-pipeline installation

1

There should be a way to install dependencies for only the pipelines that you are interested in running.

 If you receive an error like this, running the following in the c2c_env conda environment solves the issue: ``` conda install -c conda-forge...