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                                            Lorin Crawford

Implement gene set association analysis

Hey @eric-czech, you're absolutely right that would alter the resulting set of shrunken effect sizes. For that reason, I wouldn't standardize the LD matrix. Also the LD matrix is symmetric...

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SNPpips array for BANN_numpy returning 1 as first value

Hi Sandra, Great question. Yes, features have PIPs returned in order entered. So in the example data, the first couple of SNPs are causal (https://github.com/lcrawlab/BANNs/blob/master/BANN/examples_docs/BANNs_example.ipynb). I have not seen your...