loomcode

You're having this problem because MP4 is not a format supported by pillow, the package being used to save the file. Simply put, the example given where save is called...

After splitting models.CellposeModel.init.eval into two functions I was able to get nearly a 6 fold improvement in run time. One function (run_gpu) generates just the masks and saves them to...

Sure thing. Beware that I've only run this on 2D nuclear images. First I installed cellpose on a virtual env. Then I modified the **models** script in cellpose by adding...

Hey sumankhan19, This is the entirety of the code excepting the two scripts that I mentioned modifying. There's a good possibility that there's a versioning issue. If you run `pip3...

I remember there being a performance discrepancy between Windows and Linux for python multiprocessing but I'm not sure if that continues to be the case or not. I don't use...

We're dealing with low resolution images so our nucleus diameters average about 8 with a mean cell count of ~6500 per frame. I just upgraded to a new machine with...

I just tested on the new machine using the following: ``` interp=False flow_threshold=0 --fast_mode --nclasses=1 --diameter=8 --no_npy ``` Running on version 0.6.1 of cellpose, on a stack of 20 -...

Taking an example from Detectron2, I added a polygon friendly version of your "convert_to_coco" function by making some minor changes to the bounding box loop: ``` for bbox in bboxes:...

Hi ye11iwSub, I did get it running via apt-get but didn't have luck installing from source. I'm using a python 3.10 VE in Pycharm. OS is Linux Ubuntu. Thanks!