lonsbio

Thanks @ssadedin , that looks great. `title` would be a good solution, customisable without too much overhead. Suppose the only other thing, which perhaps could be encapsulated in the `About`...

_From [[email protected]](https://code.google.com/u/101816960151431571338/) on 2014-10-10T16:13:32Z_ Solved the problem using a branch variable in the first stage branch.origname = "$input" Then I use $origname at the last stage to use the original...

_From [[email protected]](https://code.google.com/u/103724192358927739929/) on 2013-03-05T05:22:14Z_ Hi ! This is some problem with java. You can not start bpipe from a linked file. I usually have ~/software/bin in my $PATH where i...

_From [[email protected]](https://code.google.com/u/116548269372547513801/) on 2013-03-05T06:21:46Z_ Hi, thanks for getting back to me. I have tried as you suggested I have added the bpipe bin folder to my PATH echo $PATH /usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games...

_From [[email protected]](https://code.google.com/u/103724192358927739929/) on 2013-03-21T14:42:51Z_ what happens if you do: cd /home/chris/Downloads/bpipe-0.9.8_beta_3/bin/ ./bpipe ?

_From [[email protected]](https://code.google.com/u/108426966432430870611/) on 2013-04-22T01:55:10Z_ Same error here, executing the helloworld.pipe. Same error when executing binaries copied in the PATH and by executing the one in the bpipe-0.9.8/bin extracted folder. Using...

_From [[email protected]](https://code.google.com/u/116481381496220708790/) on 2014-04-15T23:05:48Z_ Further investigation has tracked this down to a formatting issue in the 'exec' command - i.e. when changing the order of some variables set in the...

_From [[email protected]](https://code.google.com/u/111245303775708567821/) on 2014-07-01T22:39:23Z_ Note the following inconsistency found using the .getClass() method: if set in the file, MY_DB="" is a Groovy String but when set on the command line...

_From [[email protected]](https://code.google.com/u/101816960151431571338/) on 2014-10-10T22:23:32Z_ This looks like it could be handled by the parallel tasks "input splitting" features: https://code.google.com/p/bpipe/wiki/ParallelTasks

Coincidently I've come across this issue on something else unrelated to MINTIE. I've been debugging with a Ubuntu VM with slurm installed, running as both head node and server, which...