Mitch

icon indicating a website link https://www.linkedin.com/in/mitchlokeyceu icon indicating an email [email protected]

icon company Cornell University icon location Ithaca, NY, USA icon location PhD student studying evolution via population, quantitative, & conservation genetics.

Results 2 issues of Mitch

Separating .vcf's by individual on pooled call?

3 comment

I have merged .bam files from the 1kGP (with samtools merge -r) and performed RetroSeq discovery phase on the merged .bam. But now when I call the merged .bam I...

EasySFS runtime? Running forever?

5 comment

Hello, I am trying to use easySFS to generate SFS for 5 populations to be used as input for dadi and fastsimcoal2. I run the following; `vcf=../breeders_noDups_noHighMiss_biallelic_noZ.Jan17-2024.vcf` `id=breedersVcf_IDindpop.txt` `nohup ./easySFS.py...