Liangzhu

Hi Jin, Thank you for your suggestion! I was trying to install the new ENCODE-ATAC-seq-pipeline on my local computer with docker yesterday. But when I ran the pipeline, it seems...

Thank you, I will try. Another question: I want to run MySQL when I run the pipeline. So I run a mysql server with docker. do I need to change...

Hi Jin, I am trying to run the pipeline on google platform and DNANexus. I met problems on both platform. 1. For google-platform, the error message is as below: Caused...

Hi Jin, Thank you for your reply. I have already added the 'storage admin' permission to myself. But it does not work. Would you please help me to check the...

Hi Jin, For now, I created three buckets in my project: 1. 'encode-pipeline-genome-data-1' for hg38 genome and h38_google.tsv. 2. 'atacout' for storage of output data 3. 'atac-samples' for sequencing raw...

I tried and picked a genome TSV file under gs://encode-pipeline-genome-data/ in the input.json. But it still doesn't work..... I used the command line gsutil iam ch -d user:[email protected]:objectCreator,objectViewer gs://my-bucket ....

Hi Jin, I tried the command gsutily cp.... I can copy files from my computer to my bucket and also be able to copy file from my bucket to my...