llwiggins
llwiggins
Should U-net masking be included as part of this merger, or perhaps as a separate issue/PR?
I really like this idea! I wondered if it would also be nice to add a trace overlay to the molecule to highlight the quantitative nature of TopoStats?
Hi @ns-rse, @MaxGamill-Sheffield is going to take a look at this next week. There are some additional changes to be made so best to keep this as a draft PR...
This all looks good to me and I'd be happy for it to be merged, I tested functionality out on a set of varied molecules and all were handled correctly!...
We may not want to delete though, for example if we want to compare statistics of unbound vs. bound!
I have a gap filling algorithm used for another project but haven't implemented it in TopoStats yet as I imagined there are a load of more complex cases where my...
It fits a cubic spline through the coordinates before and after the break, seems to work well for small gaps but I imagine is quite whacky if the gaps are...
I've set an eligibility criteria which will only connect two ends if the gap between them is within a certain distance threshold (atm a certain percentage of the expected contour...