Laura White

DNA 9.4 model info

1

Hi there, I'm working on a weird use case where we're calling some DNA sequence put through R9.4 pores. I can see that the following models are still available, but...

How to interpret failed reads during modkit extract

7

I have two datasets: 1. SUP-rebasecalled direct RNA with pseudouridine calling, aligned to a reference 2. The same data as above, but now put through reference-anchored inference with remora for...

Where does P(canonical) come from?

2

I think I get where the modification probabilities are coming from (ML values / 256). But if I pass a filter that's being used for both modified and canonical calls,...

Selected types do not persist on map movement

4

As a user on the beta site, if I deselect all tree types, select only serviceberries, and then move the map, my expectation is the map will remain serviceberry trees...

pip installation pulls v3.3.0 prerelease by default (+ error on inference)

1

When installing Remora via pip, the default package pulled is 3.3.0, which appears to still be a prerelease version? My brief, unintended testing of v3.3.0 appears to produce this error...