Jonathan Dursi
Jonathan Dursi
Thanks, @david4096! Sounds good. As far as I know the 3.x release cycle for protobuf should be safe. There is one caveat - the python implementation was actually more lenient...
@rdeborj, The dockers I build for the servers generally just create the dummy file eg https://github.com/ljdursi/profyle_ingest_docker/blob/master/scripts/wrapper.sh#L33 , sorry, I should be putting those in the CanDIG organization
Intel Health & Life Sciences has a something for GA4GH api layer atop their GenomicsDB: https://github.com/Intel-HLS/GenomicsSampleAPIs
I'd hope that decision could be revisited at the plenary...
@kozbo - I agree with what you’ve said; I’d just like to see deprecation held off (and merging of PRs continue) until something(s) else appeared that this code base could...
Thanks for letting me know! I'll look into it this weekend.
Hi @yangyxt - I just ran ``` mergevcf -o foo.vcf H19080A.delly.vcf ``` I haven't examined the output in any detail but it definitely ran and generated plausible-seeming output. Could you...
Yes, it's probably time for me to write some documentation, and maybe put it on pypi. What is the highest priority for you - a quickstart, something like that?
Hi: Yes, the documentation is more or less nonexistent - my apologies, I'll try to add some in the coming weeks. It looks like you're having some trouble installing the...
I'm sorry, I'm only just now seeing this. Do you have some sample VCFs I could see this behaviour with?