Liviu Pirvan comments

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                                            Liviu Pirvan

juicebox_dump.py

I got the same error for `juicer_tools_1.22.01.jar` but it worked using `juicer_tools_1.19.02.jar`.

Any plan to add opensource implementation for each paper?

If anyone plans to pursue this idea, http://www.gitxiv.com/ offers a good interface for pairing up papers with open-source code.

Dollar $ sign ($) triggers errors in Markdown highlighting, even when escaped

I also ran into a perhaps similar issue: ![syntax_highlight-issue](http://i.imgur.com/B5b7AdJ.png) Hope this helps

Setup fails with pip install

I got the same for the PyPI version, but this worked for me: ``` $ git clone https://github.com/tomazc/iCount $ cd iCount $ python3 -m pip install --user . ```

most likely due to a circular import

> You have to PIP install from source after installing the dependencies: > > ``` > git clone -b "v1.1.0" https://github.com/open2c/pairtools.git > cd pairtools && pip install . > ```...