liuyu988

> I met with the same error. And I found the reason for the error is that the `colnames(matrix)` vs `rownames(pd)` not in the same order. You can just add...

Hi guys, I have the same problem when running the function estimateDispersions. Have you found some ways to overcome it? Thanks a lot.

> Hi there, > > So I will first comment on the original error: `ValueError: Input AGPs do not have the same set of components` > > In order to...

hello, Have you solved this problem？I met a similar problem. thanks a lot! best, Yu

Dear Yuanhua, On the example you gave on https://brie.readthedocs.io/en/latest/quick_start.html under "Pre-Step: Read Counting" for 10x genomics data, I was unable to execute brie-count or brie-quant, as it kept giving the...

the error is: [E::idx_find_and_load] Could not retrieve index file for 'cellsorted_possorted_genome_bam.bam' pysam.utils.SamtoolsError: 'samtools returned with error 1: stdout=, stderr=samtools idxstats: fail to load index for "cellsorted_possorted_genome_bam.bam", reverting to slow method\nsamtools...

@huangyh09 i have done the samtools index for the bam file and the bai file is stored in the same directory, however, i seems not to find a parameter assign...

errors: Exception ignored in: 'pysam.libcalignmentfile.AlignmentFile.__dealloc__' FileNotFoundError: [Errno 2] No such file or directory [E::bgzf_read_block] Invalid BGZF header at offset 19866824255 [E::bgzf_read] Read block operation failed with error 2 after 0...

> In v2.2.1, we now support output h5ad file if all genes only have two isoforms, no matter what splicing event types. you may consider re-run it with the new...

Hi Quanyi， Have you sovled this problem?i seem to meet the problem similar to yours. thanks! LiuYu