liuyca1

Yes, it is indeed a problem with the database. I have specified the location of the database before downloading the database, but I don’t know where the problem occurred. Funannotate...

The report after running funannotate test completely shows that there are still some errors, These errors can be ignored? (funannotate) [liuyuanchao@login /public/home/liuyuanchao/ceshi] $funannotate test -t all --cpus 20 ######################################################### Running...

> In the logfiles folder is a funannotate-EVM.log file, can you post the output of that? ok, what is the email address?

cd > In the logfiles folder is a funannotate-EVM.log file, can you post the output of that? [11/30/21 19:04:32]: /opt/anaconda3/envs/funannotate/lib/python3.9/site-packages/funannotate/aux_scripts/funannotate-runEVM.py -w /data/liuyuanchao/funannotate_test/Analysis/Bolbitius_vitellinus_JGI/fun/predict_misc/weights.evm.txt -c 48 -g /data/liuyuanchao/funannotate_test/Analysis/Bolbitius_vitellinus_JGI/fun/predict_misc/gene_predictions.gff3 -d /data/liuyuanchao/funannotate_test/Analysis/Bolbitius_vitellinus_JGI/fun/predict_misc/EVM -f /data/liuyuanchao/funannotate_test/Analysis/Bolbitius_vitellinus_JGI/fun/predict_misc/genome.softmasked.fa...

> What are your contig names, V23s? That is quite atypical to have a string after the numerical portion. The script is trying to number the clusters it found from...

Thank you so much. The speed of the software upgrade is amazing. When I realized this problem, I modified the ID name of the file obtained by the funannotate predict,...

> Okay. You didn't do anything "wrong" per say just used a naming convention I apparently haven't seen before nor think about..., here is where it died https://github.com/nextgenusfs/funannotate/blob/master/funannotate/library.py#L7032-L7039. So because...

I added a parameter and succeeded inexplicably $funannotate mask -i GCA_011800155.1_ASM1180015v1_genomic.fna --cpus 48 -o ./GCA_011800155.1_ASM1180015v1_genomic_masked.fna --debug ------------------------------------------------------- [Nov 25 04:24 PM]: OS: CentOS Linux 7, 160 cores, ~ 958 GB...

Dear Palme Thanks for your reply. I checked the version of Augustus and it is already 3.5.0 (build number is pl5321h95201ac_4 from bioconda), but it still reports an error. ------------------ 原始邮件 ------------------ 发件人:...

> Yeah, that build seems to be the problem. Need to install a different build or install Augustus a different way. Funannotate only cares that it's in the PATH, it...