Lisch

Same issue when using CellChatDB.human. I countered this issue when I ran `netAnalysis_contribution(cellchat,signaling = "SIRP")`

It seems that RA, SIRP, PARS, LAIR1 might have duplicated pair according to the code offered in https://www.jianshu.com/p/ffe99c3028da  @sqjin

我也想知道，SCP什么时候可以兼容Seurat V5

> > This did the trick for me: > > ```shell > > # >>> conda initialize >>> > > # !! Contents within this block are managed by 'conda...

I am pretty curious about your problem. Actually, I encontered similar problem. I have 100 samples. Firstly, I preprocessed each sample to filter low-quality cells and find doublets. Then I...

Thanks. How can I send my data to you? @igrabski

Now the infomation of RIMA enviroment was as follows: ``` $ conda list # packages in environment at /home/mailab003/biosoft/miniconda3/envs/RIMA: # # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex...

I tried to install RIMA for many times. Finally, I installed three environments successfully and worked fine. The environment named "stat_perl_r" always could not work fine. I listed my environment...

Moreover, why not enroll Celltypist and BBKNN into OV? I think some of your previous excellent strategies for batch removal and annotation on Wechat Official Accounts can also be integrated...

Thanks for your kind reply, but it seems that I didn't express what I meant exactly. I appreciate the opportunity to clarify my suggestions: 1. **Flexibility in `ov.pp.preprocess`.** I noticed...