Lisa_Grigoreva

Number of unique reads fastq mode

3

Hi, I was worried about what exactly represents the output of 'Number of unique reads' in collapsing reads from fastq? Number of input read 6609696 Number of unique reads 3885326...

ValueError: NaN, inf or invalid value detected in endog, estimation infeasible

2

Hello, I'm running Spladder under default settings, the graph was constructed successfully without any errors. However, the testing mode is crushed for 2 samples of my cohort. I'm already re-done...

Hello, Thank you for creating such a great tool! I was wondering whether the UMI deduplication process depends on the read length. For example, if read 1 has a length...