Caijin Lin

Hi. Thanks for the cool tool. I'm wondering if you can add some parameters to prepareMutSig so that it can add the effect and categ columns required by MutSigCV? Thanks.

Hi. I have identified and annotated several variants by ANNOVAR. I dont know yhich function in the bedtools can be used to determine if the variants was in the last...

How you define HOMODEL and AMP for CCLE data?

1

https://www.cbioportal.org/study/summary?id=ccle_broad_2019 Hi. I'm wondering how you define HOMODEL and AMP for CCLE CNV data since DepMap only provide relative copy number ratio. Thanks.

Export was removed from CRAN.

1

Hi, TOM. Package 'export' was removed from cran. I wonder if you can upload it again. Thanks. Lin.

Tutorials in web or pdf form?

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Hi. I've failed to install hdp with ' build_vignettes = TRUE' on Windows. So I cannot get access to the tutorials with browseVignettes("hdp"). I dont know if there is any...

Error when run DoAbsolute in allelic mode using example data.

3

Hi. I've run DoAbsolute utilizing the example data. Here present the code. ``` example_path = system.file("extdata", package = "DoAbsolute", mustWork = T) # segmentation file seg_normal = file.path(example_path, "SNP6_blood_normal.seg.txt") seg_solid...

HI. I wonder if you could tell me how to access the clinical data of the 10389 pancan germline cases.

Segmentation fault (core dumped) when installing vmware tools

10

Hi, I want to install VMware tools but I was warned the segmentation fault (core dumped) and vmware tools was not installed successfully. open-vm-tools packages are available from the OS...

如何升级至0.1.22？

6

你好，请问下如何升级至0.1.22。目前edge商店里版本号好像还是0.1.21，影响因子也是老的影响因子。

NMF in parallel mode runs only in two cores.

5

Hi @renozao @khughitt . I ran NMF in parallel mode by setting `.options = 'v2p8'` in the Ubuntu terminal using R. However, it seems that NMF only uses 2 cores,...