lilypeck

Diamond blastp database error

6

**Are you using the latest release?** funannotate 1.8.9 **Describe the bug** I am running funannotate predict and I am getting an error about the diamond blastp database being incomplete. I...

**Are you using the latest release?** Yes - am using docker **Describe the bug** I have two errors with re-using a JSON file. I want to re-use a parameters JSON...

stag.py syntax error

1

Hi Thanks for this great tool. I have used OrthoFinder lots in the past. I have installed STAG-1.0.0 from the releases page And when I run the test dataset, I...

Annotation file error - segmentation fault

5

Hello and thank you for this great tool! When I use one annotation file, defiant runs fine with no problems, e.g. ``` head ../reference.gtf chr1 Gnomon gene 8414 14345 ....

modkit dmr - failed to read tabix index

6

Hello ``` mod_kit 0.2.8 ``` I am getting a very basic error: ``` > Error! failed to read tabix index "barcode05_E_CHH.bedmethyl.gz.tbi" > caused by invalid reference sequence names > caused...

--polish-target has reduced N50 and largest contig

1

Hello Firstly thanks for making this great tool. I have used`Flye 2.9.3-b1797` to assemble ONT reads for a plant genome (assembly size 830 Mb). I installed Flye using bioconda. Before...

Racon aborting with 'core dumped' error

1

Hello Firstly thanks for making this great tool. Racon has run fine on some of my genomes, but then on others it is throwing up a strange error. First i'm...

Hello Firstly thanks for making this great tool. I installed `duet` using mamba. I have run `duet` as follows ``` module load mamba mamba activate duet mkdir -p duet_out/ duet...