Hana

Hi, I also get a similar error: "Error: Failed to install 'MuSiC' from GitHub: Failed to install 'xbioc' from GitHub: (converted from warning) installation of package '/tmp/Rtmp6Qovba/file14c3605315eb/xbioc_0.1.17.tar.gz' had non-zero exit...

I changed my R version and then it worked

With `scvi-tools==1.0.3` installed, I got a similar error while training MultiVI and could fix the problem by installing `scvi-tools==0.20.3`.

Hi, Thanks for your interest. The anndata will be stored in the model when you initiate it which in your case has been the latest anndata you trained the model...

Hi Sarah, thanks for using our tool! Right, the order of the bulk samples don't change. The output of "ag.init" when you feed in anndata, contains the mean expressions of...

Hi Chuang, Thanks for your interest. 30 cell types are quite a lot. If there is a high correlation between the cell types, no method can handle it. I recommend...

Hi Chuang, Unfortunately we don't support adding genes to the deconvolution, however we will consider it for future. For the moment, you can run the regressions individually after concatenating the...

Hi Peter, Thanks for using our tool. You can get the selected solution of the optimizer using [autogenes.Interface.selection](https://autogenes.readthedocs.io/en/latest/api/autogenes.Interface.selection.html#autogenes.Interface.selection). Which should include the selected genes and their mean expression across cell...

Hi Christian, Thanks for your interest! I'm not sure if I got your question. Are you looking for the markers per cell type? If so, this is not what autogenes...

Thanks @rcannood! I reinstalled R to the latest version but still my kernel dies immediately after running that code. However, I managed to run it using docker! Thanks for that...