Qi ZHAO

Feature request: add txt output and coverage information to the mutations

2

Hi, Shifu @sfchen `html` and the `json` format are good , but the `tsv` format output could be a charming option when performing parsing for the downstream analysis. In addition,...

Todo list

3

- [x] provide input format for [IDEA](https://github.com/likelet/IDEA) - [ ] Add lncRNA identification method by LGC(http://bigd.big.ac.cn/biocode/tools/BT000004) - [ ] integrate report by MultiQC(http://multiqc.info/) - [ ] Functional classification by [SEEKR](https://www.nature.com/articles/s41588-018-0207-8)...

- [ ] add Neo-antigen prediction feature (proposed by Zheng Hu) - [ ] supporting oncoplot with mixed samples (both one-simple patients and multi-sample patients) - [ ] show the...

Pseudo-PR: First code review

4

Many thanks to contributing to nf-core/lncpipe! Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs). ##...