Johanna Bayer

The aim of this summer project is to enhance the accessibility of the PhysIO Toolbox for neuroscience researchers by focusing on the following capability, usability and quality aspects: **Core Goals**...

Error due to deprecated nanmean function

2

The nanmean function used in tapas_physio_filter_respiratory.m is deprecated (https://au.mathworks.com/help/stats/nanmean.html) and throws an error with Matlab R2022a when running examples.

Does the Clinica ADNI-to-BIDS pipeline build field maps?

6

**Description** Hi, we are planning to use the ADNI to BIDS pipeline. We could not find any information on whether this pipeline includes the building of field maps. Does it?...

Adding file endings "real" and "imaginary" to adni_utils.py to return "fmap"; to cover all file endings. This allows running over: "... fmap_ e2_imaginary.json" "... fmap_e2_real.json" and not throw an error....

Module 4, Lession 1: No distinction between operational software and infrastructure software

3

In Module 4, Lession 1 (Open Software) there is no distinction between operational and infrastructure software: "Operational Software – Operational software is used by data centers and large information technology...

Johanna (@likeajumprope) adding the Twin Normative modelling project

[NEW CHAPTER] - Publish anything that is not a paper

3

### Title Publishing non-traditional research objects ### Guide Reproducible Research ### Draft _No response_ ### Summary of proposed chapter Provide an outline of where and how to publish non-traditional research...

Wip add section building website with quarto

1

### Summary This Draft PR is aims on adding a section "Building a website with Quarto" to the personal website chapter. This work was started during the November 2025 bookdash....