Liezel Tamon

icon indicating a website link https://bashfordrogers.web.ox.ac.uk/home icon indicating an email [email protected]

icon company Biochemistry icon location University of Oxford, United Kingdom icon location CompBio Postdoc @immune-rep (https://bashfordrogers.web.ox.ac.uk/home), formerly @sims-lab. CompBio instructor @OBDS-Training. DPhil student @SahakyanLab.

Results 8 comments of Liezel Tamon

TADbit model: input matrix not generated by TADbit

Dear David, Thank you for the reply. It might be difficult then since I'm planning to model chr 1 with 6232 beads. Best, Liezel On Wed, Sep 8, 2021, 18:44...

Error running GRNBoost2 step

> git version of arboreto should fix this: [aertslab/arboreto#39](https://github.com/aertslab/arboreto/pull/39) running into this issue, https://github.com/aertslab/arboreto/issues/33, when trying to install arboreto from source..

Is pyscenic grn proceeding? It does not throw any responses.

> add my experience here for those feeling anxious like me. > 20000 genes * 20000 cells 30 core > 9hr30min Thanks for sharing! @Pentayouth . How about memory usage?...

Get all pairwise comparisons from model

Hi @fabsig, Apologies for the late reply. Let me actually share a better [sample data](https://drive.google.com/drive/folders/1j5VxpUXU8QuUbf6l2fg8D7OzEEjwjCUJ?usp=sharing) and the wrapper functions I wrote based on [MASC](https://github.com/immunogenomics/masc/blob/master/R/masc.R), lme4 and emmeans. So my goal...

make_sampleqc_report can not find "setorder"

same error!

An error in gsea analysis like 'missing value where TRUE/FALSE needed'.

I have the same error, but when I run with fgsea::fgseaMultilevel() it works fine

How to use more than 1 worker in Jupyter?

+1

How to use more than 1 worker in Jupyter?

> I want to +1 > > I followed along with the Jupyter example for PBMC data. I used the command: > > `cnmf_obj.factorize(worker_i=0, total_workers=16)` > > And the output...