liamfriar

Hi, I am also finding mmseqs taxonomy runs much slower than expected. I have run a metagenome assembled genome (MAG) as a query (after turning it into a mmseqs database)...

Sorry that that error is printed without the proper new lines...I tried unsuccessfully to edit that post to fix that.

I now get the following: ##It printed a bunch to sdout with 2-line units that lookedl like: ``` NODE_1206_length_2518_cov_2.828258_7 # 2167 # 2508 # 1 # ID=290_7;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.567 MKQPLVDVVRRLIQKIVVGPRPGHQQASLEIHGQIASILAAMEAATIMEKQLITLHHHQYLEAEDAGLLDTEDKRKKLLSDFAEELEVRRQQWRNLQVSVVAGAGFEPAAFRL* ``` ##Then:...

Hi Sergei, as usual, thank you for the quick and informative reply! I am only using the labeled trees for `hyphy RELAX` so it sounds like the unrooting would not...

Hi again @spond et al, I reran my analysis using `gotree rename` instead of `hyphy label-tree.bf` to keep the tree rooted because I was curious if it would make a...