Leo Williams

Can we get a dark mode version of the "Academic" theme?

export to PDF error: "Document contains trailing content not separated by a ... or --- line"

1

### Description im trying to export to PDF (non-latex option), but can't because i get the following error: `Document contains trailing content not separated by a ... or --- line`...

add autocapitalization in autocorrect options (or use macOS system defaults)

2

### Description I would like to see the addition of autocapitalization to the autocorrect options, both at the beginning of sentences and to autocorrect things like proper nouns, etc. this...

Choose a different font for the output

1

Is there any way to specify a different (monospace) font for the HTML output? To get the output HTML in the font SF Mono, for example, I tried: ``` ......

-p/--threads option always uses 1 more thread than is specified.

9

when i run bowtie2 and specify the number of threads to use(eg `-p 1`, `-p 4`), the amount of CPU usage is always 1 more core in use than is...

short-captions Lua filter not working in list of figures

1

im trying to render an R Markdown document using the `short-captions.lua` Lua filter. the render is using `bookdown` references and is using the `pandoc` version that comes with RStudio. THE...

for various reasons, we're looking to get a mac studio with m2 ultra chip as a workstation for running bioinformatics workflows which include running NMF thru this package. i havent...

Multiple errors and unavailable packages when trying to install TCGAWorkflow

3

I'm doing a fresh install of R/RStudio. When I go to install `TCGAWorkflow`, I get several errors. Here is a summary of all the error lines when running `BiocManager::install("TCGAWorkflow")`: ```r...

Loading a workspace messes up functionality

1

I've noticed that when this plugin is enabled, whenever I load a workspace from the core workspaces plugin, the left sidebar will permanently expand and not go back into hiding....

Separate `assets/` folder for each note

2

id like to request the feature addition of having a separate `assets/` folder for each note. this could take the form of: 1. `assets-${filename}/` 2. but preferably there would be...