Lukas

Prevent cutting of coverage peak tip

8

Hi there, any hint how I can prevent that samplot cuts off the tips of the coverage track? Or otherwise, is there a possibility to manually set the coverage range...

ERROR: Use of uninitialized value $item in sprintf at /opt/wtsi-cgp/bin/ds-cgpwgs.pl line 255.

2

Hi there, I tried to run the dockstore-cgpwgs:2.0.0 container like this: ``` singularity exec ./dockstore-cgpwgs-2.0.0.simg ds-cgpwgs.pl \ -r /groups/ob/Software/docker/ftp.sanger.ac.uk/pub/cancer/dockstore/human/core_ref_GRCh37d5.tar.gz \ -a /groups/ob/Software/docker/ftp.sanger.ac.uk/pub/cancer/dockstore/human/VAGrENT_ref_GRCh37d5_ensembl_75.tar.gz \ -si /groups/ob/Software/docker/ftp.sanger.ac.uk/pub/cancer/dockstore/human/SNV_INDEL_ref_GRCh37d5.tar.gz \ -cs /groups/ob/Software/docker/ftp.sanger.ac.uk/pub/cancer/dockstore/human/CNV_SV_ref_GRCh37d5_brass6+.tar.gz \ -cr...