Limitto
Limitto
Hi, I ran Smoove using a population calling mode. There is a duplication shared by >10 samples however, Smoove detected this in none of the samples likely due to low...
Hi, I tried to merge files from 206 samples, and encountered this error. Do you have any idea where should I look at? The merging job ends prematurely, and left...
Hi, could you please help me understanding how SU is counted in Lumpy and SVtyper? I run smoove with the following steps: 1. samblaster -> 2.smoove call -> 3.smoove merge...
Hi, I tried to merge files from 206 samples, and encountered this error. Do you have any idea where should I look at? The merging job ends prematurely, and left...
Hi, I used duphold to filter out false positives and it works pretty well. Thanks a lot for making this nice programme! I was thinking that Duphold can be useful...
Dear authors/developers, Previously I made a short script to make violin plots to visualize average depth for all Ref/Ref, Ref/Alt, and Alt/Alt samples, for each SV sites (aggregating Duphold annotated...
Dear, I used Lumpy via Smoove to call CNVs in a population of ~600 samples. First, I used 200 high coverage samples to discover CNVs, and then genotyped the sites...
Dear, I ran Lumpy on some non-human samples and found some extremely large deletions and duplications at almost the same positions. The examples are: var_id | BIN | SVLEN DEL_1...