Limitto
Limitto
Hi, I repeated the merging step several times, but it aborted at the exact same position. You can see which position it stopped by going to the tail of the...
Right. I indeed observed in my dataset, that high coverage samples' DHBFC values could easily be rounded up to discrete copy numbers. However, rounding up of DHBFC values (and to...
Hi, I wrote you back to your e-mail "'[email protected]'". Could you please check your mailbox? Lim
A small piece of extra information about the duplication: As I mentioned above, I am using Smoove, and thus start CNV calling by running samblaster to collect split & discordant...
Hi again, I used samblaster with the following command: python bamgroupreads.py -f -M -i $bam | samblaster --ignoreUnmated -M -a -e -d results-smoove/$sname.disc.sam -s results-smoove/$sname.split.sam -o /dev/null I realized that,...
Thanks for the recommendation. I will run is as you suggested and let you know the outcome.
Hi, Thanks for the suggestion. Sorry I will confess, that I did not use that programme you recommended. But I use smoove and duphold together, so I already knew that...
Can you elaborate on how do you "subtract SVs with repeat tracks"? I was thinking of making a bed format file $1(chr) $2(cnv_st_pos-CI95) $3(cnv_st_pos+CI95) and then to do bedtools intersect...