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Low alignment rate even though STAR aligns almost all reads

Hi, I am the user from the google group. @warrenmcg exon mapping rate from STAR looks close enough if my interpretation of the metrics is correct. I am aligning a...

Low alignment rate even though STAR aligns almost all reads

Thanks for the clarification @warrenmcg . It makes sense now. The data came from this [bioproject](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA491641) and the RNA extraction protocol do not seem to be detailed anywhere.

is there a container?

Bump. A couple of years later...