Chun Shen Lim
Hi Timothée, have you tried annotwriter?
A workaround would be creating a new conda environment and installing the latest fastp. `conda create -n fastp -c bioconda fastp=0.23.2`
Thanks @mlin ! Here is what I did to install samtools properly and resolve the reference sequence issue with CRAM. ``` git clone https://github.com/samtools/samtools.git cd samtools wget https://github.com/samtools/htslib/releases/download/1.21/htslib-1.21.tar.bz2 tar jxvf...
>By far the better solution here is to set up your own local reference cache for large-scale usage or to manually specify the reference files for adhoc usage. @jkbonfield Would...