Lauren Fitch

Quality scores lost

2

I recently ran TranscriptClean on my PacBio reads, and it ran fine after making the changes you suggested (thanks!). However I noticed that the quality scores present in the input...

I have a reference sequence (FASTA) that looks like this: ``` >reference_sequence ACTGACTGACTGACTGACTGACTGACTG ACTGACTGACTGACTGACTGACTGACTG ACTGACTGACTGACTGACTGACTGACTG ``` PBSIM included the newlines in the simulated reads. ``` @S1_1 GAAAGCTAAAGATGTTCAGCCAACCATTATTATTAATAAAAATGGCCTTATCTCTTTGGAAGATATCTATGACATTG CGATAAAACAAAAAAAAGTAGAAATATCAACGGAGATCACTGAACTTTTGACGCATGGTCGTGAAAAATTAGAGGAAAAA ``` I...

AWS Batch error

8

Hello, I've been testing my setup to run drugsniffer on my AWS Batch configuration, and I've successfully run the 3vri example on Batch. I next tried to run the 5l2s...