Lara Ramona Peeters

I was finally able to test it and passing `--partition` in the `sbatch` command works on hortense.

To give a little more context I will clarify some parts of the setup of hortense and how I tested that passing `--partition` in the `sbatch` command would resolve our...

We are also working on an installation for an HPC system and are having trouble getting it to run properly. Making the example data back available would be a big...

https://github.com/molbiodiv/bcgTree/blob/dceaf223a92679e399aab367ca3ef29f618d94b7/lib/bcgTree.pm#L224 This line needs to be changed to this if you want it to work with MUSCLE 5 `my $cmd = $self->{'muscle-bin'}." -align $out/$gene.fa -output $out/$gene.aln";`

While trying to rerun the tests (numpy.fft.test(verbose=3) and numpy.polynomial.test(verbose=3)) on the neoverse_v1 aws clusters ( c7g.2xlarge and c7g.4xlarge). I found that EESSI was using the neoverse_n1 installs. So it will...

Where should I open that issue?

numpy.fft.test(verbose=3) ``` ============================================================ FAILURES ============================================================ ____________________________________________________ TestFFT1D.test_identity _____________________________________________________ self = def test_identity(self): maxlen = 512 x = random(maxlen) + 1j*random(maxlen) xr = random(maxlen) for i in range(1, maxlen): > assert_allclose(np.fft.ifft(np.fft.fft(x[0:i])),...

numpy.polynomial.test(verbose=3) ``` ============================================================ FAILURES ============================================================ ______________________________________________ test_bad_conditioned_fit[Polynomial] ______________________________________________ Poly = def test_bad_conditioned_fit(Poly): x = [0., 0., 1.] y = [1., 2., 3.] # check RankWarning is raised with pytest.warns(RankWarning) as...

https://github.com/EESSI/software-layer/issues/320

``` [laraPPr@fair-mastodon-c6a-4xlarge-0001 ~]$ lscpu Architecture: x86_64 CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 16 On-line CPU(s) list: 0-15 Thread(s) per core: 2 Core(s) per socket: 8 Socket(s): 1...