Kyle Kimler

icon location Boston, MA icon location Senior Open Data Scientist at the Cell Discovery Network of Boston Children's Hospital

Results 2 issues of Kyle Kimler

Migrating Seurat extension to Seurat v5

2 comment

Hi seurat team. I am the author of ARBOL, a Seurat extension for calculating and depicting scRNAseq data as taxonomic trees. www.github.com/jo-m-lab/ARBOL Seurat v5's new seurat object has caused quite...

ToDataFrameTable does not extract internal nodes

Hi! I'm using the Node class for most tree manipulations. I propagate annotations up the tree from the leaves using the vignette's methods (including unique "sample" id's under which many...