kwonej0617

Hi, Yuk Kei. I have a question regarding this from your previous comment, 'If you get a negative number in the diff_mod_rate_con_vs_test column, this means that test < con, which...

Actually what I shared above is **wt_eventalign.txt and ko_eventalign.txt, not wt_eventalign.txt and ko_eventalign.txt**. Here is eventalalign_collapse.tsv. As you mentioned, each line has a distinct position within a transcript. ``` #71576efc-add3-4fc3-823c-05628a65a835...

@lmulroney Thank you for your response. I installed nanocompore using conda. I will try to run nanocompore sampcomp outside of the script, instead of submitting a job to the cluster....

@lmulroney Thank you for your advice. I have installed nanocompore and checked python installation again. After doing that, I didn't have "SystemError: null argument to internal routine" during running nanocompore....

Hi @yuukiiwa. Thank you for your reply. Actually, HEK293T-WT-0-rep2 is not the dataset I downloaded to run xPore in this run. Here are the files I downloaded. Could you please...

Hi @yuukiiwa I really appreciate your reply! When I decompressed WT1.tar.gz file, it contains **data.index, data.json** (Usually, when I run xpore dataprep, I got four types of file - data.index,...

Thank you for your reply @yuukiiwa ! In xPore paper, it was mentioned that nf-core/nanoseq was used to generate preprocessing data. I want to try to run nf-core from raw...

@yuukiiwa Thank you for your data! Also, I have a question regarding minimap usage. From xpore_manuel.pdf file, you provided a code for aligning the data into transcriptome:  I am...

Hi, @yuukiiwa Happy new year! I just wanted to ask you which **minimap2 and nanopolish version** you used in generating the HEK293T-rep2 data you shared with me. > Sorry for...

Thank you so much @yuukiiwa !