Kristin Valdez
Kristin Valdez
Hello, is there an update on this issue? I'm having the same problem, I'm using paired end reads and I also have a chr prefix in my gtf and bam....
Thank you for your quick reply. No unfortunately I cannot share the data, I was hoping a resolution to one of the above issues would help me debug. Do you...
If it helps, I was able to run an older version of rnaseqc. I attached some of the results here. [report_redact.pdf](https://github.com/getzlab/rnaseqc/files/5680309/report_redact.pdf)
These are the fields in my gtf, I see that they differ slightly when compared to the example. Is gene_status a required gtf field? chr1 HAVANA exon 13221 14403 ....
Hello hello, an update, I tried a couple of things but I am able to get gene counts when I use the legacy mode flag.
Greetings, thank you for your assistance earlier. I was able to get rnaseqc to run and detect genes in legacy mode, however I believe I'm missing some metrics in my...
Thank you for your help. I added `-t none`, and have tried with a couple of SE fastq files, the larger ones take longer but still end up with the...
The practice run below seems to work, the only issues that I currently see are html errors at the bottom and the following message in some of the html output...