kubu4

All GFF features placed on each scaffold in multi-FastA file

1

I have a multi-FastA file containing 18 genomic scaffolds. I also have a GFF containing gene features for all of the scaffolds. However, Artemis appears to be mapping _all_ gene...

Documentation needed for Fqtools splitpool

2

I have the following script provided by BGI: ./iTools Fqtools splitpool \ -InFq1 file1.fq.gz \ -InFq2 file2.fq.gz \ -Index index.lst \ -Flag enzyme.txt \ -MisMatch \ -OutDir split/ What is...

IndexError: list index out of range during "Screening of possible de novo microRNAs"

5

I'm getting the above listed error. This is odd, as I've actually run this successfully previously, with a different subset of the same input reads! If you happen to have...

Action fails, but no error? Appears incomplete - no summary.

13

Whenever the `urlchecker-action` runs, it fails. The end of the log file appears to be incomplete, as it doesn't provide any summary and/or error messages.  This...

Idea from lab meeting today to explore a means by which to create Quarto notebook posts in individual project GitHub repos and then pull those posts into a Quarto website...

Quarto - Clicking on categories doesn't work in my notebook

1

Notebook is here: https://robertslab.github.io/sams-notebook/ Repo is here: https://github.com/RobertsLab/sams-notebook Could someone please visit my notebook and confirm that they experience the same behavior? When I visit [Megan's notebook](https://meganewing.github.io/mewing-notebook/), clicking on categories...

Schedule hazardous waste pickup

1

Meet with @kubu4 for instructions/guidance.