Da (Derek) Kuang

Hi Christoph, Thank you for the great work of SCTransform! Not only is the paper well-written, but also the implementation is brilliant. I just have one confusion after reading the...

Normalization section in too-many-cells differential -h

1

Hi, Thanks for building such a nice tool. But I am a bit confused about the normalization in the differential analysis component. The help page does not help much since...

The difference bewteren Download Page and this repository

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Hi RaptorX team, Thank you for providing such a great tool. I have a naive question but have not found an answer after walking through the website. I wonder what...

Hi, Thank you very much for the great dimension reduction method! I am working on a cell differentiation project and thinking about trying PHATE, but the only concern is that...

Rmagic was removed from the CRAN repository

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**Describe the bug** Hello, based on the following URL, it seems `Package ‘Rmagic’ was removed from the CRAN repository`? Are we considering reuploading it? https://cran.r-project.org/web/packages/Rmagic/index.html

Hi, Thank you for the great software; it's been incredibly useful. I have a question regarding the statistical approach used in `subsetCommunication`. In the current implementation, I noticed that interaction...

Reproduce downsample benchmark

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Hi, Thank you for the great work. I had an issue when reproducing the results in the downsampling benchmark and any insight would be highly appreciated! Basically, I am trying...

## What This PR introduces memory-mapped arrays (np.memmap) to the tile prediction step in Model._run_model. The tiles are temporarily stored on disk instead of being held in RAM during processing....