Katrin Sameith

Hi there, Another one I just noticed: The sample colours in the "FRiP score" plots are flipped, compared to the other plots. Best wishes and thanks a lot, Katrin

Same here. I would like to rotate an image, so both of my images have the same orientation and are easier to compare. Any update by any chance? Thanks a...

Dear all, I have had a closer look into this issue. I believe that the way `macs2` is used for this pipeline is wrong. To understand my point it is...

Todo: If the directory is not empty, the script should throw an error; unless `overwrite=TRUE` ... in that case the results folder is cleared with the exception of the `annotation`...

Yeah, I'd be open for that. Let's discuss it with @andpet0101. Sometimes the clients know upfront that they want to compare sample1 and sample2, but whenever clusters are involved, the...

Hi @kosankem, In order to finish our first major release, I suggest that we keep this discussion open, and work it out after the release, as it is not super...

Dear @semenko Thanks a lot for getting back to us. Please feel free to post any issues you are getting related to high cell numbers. Our datasets are usually a...

@andpet0101 will check out if `cellxgene` now allows transparent colours. If it doesn't we need to find a bigger colour palette.

Katrin incorporates slingshot. Andreas will check out velocity analysis, and incorporate it if it is an easy fix. Else we keep it for later. https://htmlpreview.github.io/?https://github.com/satijalab/seurat.wrappers/blob/master/docs/velocity.html

I think that we should look into Cell Rank. However, not for release 1.0 :-), it can come in later.